John David N. Dionisio, PhD

Books & Book Chapters

Gilbert RL, Murphy N, Dionisio JDN. “Psychology Island: A case study of interdisciplinary education in a 3D virtual environment.” In Gregory S, Lee M, Dalgarno B, Tynan B (eds.), Virtual worlds for Online Learning: Cases and Applications, pp. 121–134. Nova Science Publishers, Hauppauge, New York, 2015.

Gilbert RL, Dionisio JDN, Forney A, Dorin P. “The Identity Mapping Project: Demographic differences in patterns of distributed identity.” In Studies in Health Technology and Informatics Volume 219: Annual Review of Cybertherapy and Telemedicine, pp. 91–96. IOS Press, 2015.

Dionisio JDN, Toal R. Programming with JavaScript: Algorithms and Applications for Desktop and Mobile Browsers. Jones and Bartlett Learning, 2013.

Dionisio JDN, Fulton B, Fulton M. Instructor Solutions Manual to Accompany Multivariable Calculus, Fourth Edition, by Dennis G. Zill and Warren S. Wright. Jones and Bartlett Learning, 2011.

Dionisio JDN, Fulton B, Fulton M. Instructor Solutions Manual to Accompany Single Variable Calculus: Early Transcendentals, Fourth Edition, by Dennis G. Zill and Warren S. Wright. Jones and Bartlett Learning, 2011.

Toal R, Dionisio JDN. The JavaScript Programming Language. Jones and Bartlett Publishers, 2009.

Dionisio JDN, Cárdenas AF. “Advances in Image Database Languages.” Chapter 7, Medical Image Databases, ed. S. Wong, Kluwer Academic Publishers, 1998.

Peer-Reviewed/Juried Articles

Korpusik M, Freitas J, Dionisio JDN. “Impact of Late Policies on Submission Behavior and Grades in Computer Programming.” Paper presented at 2022 ASEE Annual Conference & Exposition, Minneapolis, MN. August, 2022. https://peer.asee.org/41566

Dahlquist KD, Dionisio JDN, Libeskand-Hadas R, Bargagliotti AE. “Breaking Boundaries in Computing in Undergraduate Courses.” Journal of Research in STEM Education 4(1), pages 81–100, July 2018. https://j-stem.net/index.php/jstem/article/view/37

Dahlquist KD, Dionisio JDN, Fitzpatrick BG, Anguiano NA, Varshneya A, Southwick BJ, Samdarshi M. “GRNsight: a web application and service for visualizing models of small- to medium-scale gene regulatory networks.” PeerJ Computer Science 2:e85, September 2016. https://doi.org/10.7717/peerj-cs.85

Dionisio JDN, Burns WG, Gilbert R. “3D virtual worlds and the Metaverse: Current status and future possibilities.” ACM Computing Surveys 45(3):1-38, June 2013. http://dl.acm.org/citation.cfm?id=2480741.2480751

Carberry AR, Siniawski MT, Dionisio JDN. “Standards-based grading: Preliminary studies to quantify changes in student affective and cognitive behaviors.” In Proceedings of IEEE Frontiers in Education (FIE) 2012; Seattle, Washington, October 3–6, 2012.

Siniawski MT, Carberry AR, Dionisio JDN. “Standards-based grading: An alternative to score-based assessment.” In Proceedings of the 2012 ASEE PSW Section Conference; San Luis Obispo, California, April 19–21, 2012.

Dionisio JDN, Dahlquist KD. “Improving the computer science in bioinformatics through open source pedagogy.” ACM SIGCSE Bulletin 40(2):115-119, June 2008. http://dl.acm.org/citation.cfm?id=1383602.1383648

Morioka C, Dionisio JDN, Bui AA, El-Saden S, Kangarloo H. “StructConsult: Structured Real-Time Wet Read Consultation Infrastructure to Support Patient Care.” In Proceedings of the 12th World Congress on Health (Medical) Informatics (Medinfo 2007):429–433; Brisbane, Australia, August 20–24, 2007.

Dionisio JDN, Dickson CL, August SE, Dorin PM, Toal R. “An open source software culture in the undergraduate computer science curriculum.” ACM SIGCSE Bulletin 39(2):70-74, June 2007. http://dl.acm.org/citation.cfm?id=1272848.1272888

Bui AA, Morioka C, Dionisio JDN, Johnson DB, Sinha US, Ardekani S, El-Saden S, Taira RK, Aberle DR, Kangarloo H. “openSourcePACS: An Extensible Infrastructure for Medical Image Management.” IEEE Transactions on Information Technology in Biomedicine 11(1):94-109, January 2007. http://ieeexplore.ieee.org/search/wrapper.jsp?arnumber=4049789

Chen A, Dionisio JDN, Meng F, Churchill BM, Kangarloo H. “Automated generation of diagnosis-specific visualizations of electronic medical record data for pediatric patients with neurogenic bladder.” In Proceedings of the International Medical Informatics Association (Medinfo) 2004; 2004(CD):1550; San Francisco, CA, September 7–11, 2004.

Bui AA, Taira RK, Goldman D, Dionisio JDN, Aberle DR, El-Saden S, Sayre J, Rice T, Kangarloo H. “Effect of an imaging-based streamlined electronic health care process on quality and costs.” Academic Radiology 11(1):13–20, January 2004.

Johnson DB, Zou Q, Dionisio JDN, Liu VZ, Chu WW. “Modeling Medical Content for Automated Summarization.” In Annals of the New York Academy of Sciences, 980:247–258, 2002. http://onlinelibrary.wiley.com/doi/10.1111/j.1749-6632.2002.tb04901.x/abstract

Bui AA, Weinger GS, Barretta SJ, Dionisio JDN, Kangarloo H. “An XML Gateway to Patient Data for Medical Research Applications.” In Annals of the New York Academy of Sciences, 980:236–246, 2002. http://onlinelibrary.wiley.com/doi/10.1111/j.1749-6632.2002.tb04900.x/abstract

Dionisio JDN, Bui AA, Johnson D, Thompson LL, Sinha U. “Designing a Patient Education Framework via Use Case Analysis.” In Annals of the New York Academy of Sciences, 980:225–235, 2002. http://onlinelibrary.wiley.com/doi/10.1111/j.1749-6632.2002.tb04899.x/abstract

Sinha U, Bui A, Taira R, Dionisio JDN, Morioka C, Johnson D, Kangarloo H. “A Review of Medical Imaging Informatics.” In Annals of the New York Academy of Sciences, 980:168–197, 2002. http://onlinelibrary.wiley.com/doi/10.1111/j.1749-6632.2002.tb04896.x/abstract

Dionisio JDN, Johnson DB, Bui AAT, Sinha U, Kangarloo H. “A Design for Integrating Parallel and Overlapping Software Development Projects.” In Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, June 2002.

Bui AA, Dionisio JDN, Morioka CA, Sinha U, Taira RK, Kangarloo H. “DataServer: An Infrastructure to Support Evidence-Based Radiology.” Academic Radiology 9(6):670–678, June 2002.

Bui AA, Taira RK, Dionisio JDN, Aberle DR, El-Saden S, Kangarloo H. “Evidence-Based Radiology: Requirements for Electronic Access.” Academic Radiology 9(6):662–669, June 2002.

Johnson DB, Zou Q, Dionisio JDN, Chu WW. “Summarizing Medical Documents using Multi-word Combinations.” In Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, pp. 401–407, June 25–28, 2001.

Bui AAT, Weinger GS, Barretta SJ, Dionisio JDN, McCoy JM. “An XML Gateway to Patient Data for Medical Research Applications.” In Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, pp. 395–400, June 25–28, 2001.

Dionisio JDN, Bui AAT, Johnson DB, Thompson LL, Sinha US. “A Java-Based Framework for Maintaining Patient Education Content.” In Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, pp. 389–394, June 25–28, 2001.

Sinha US, Dai BY, Johnson DB, Taira RK, Dionisio JDN, Tashima GH, Golamco M, Kangarloo H. “Interactive Software for Generation and Visualization of Structured Findings in Radiology Reports.” _American Journal of Roentgenology _175:609-612, 2000.

Sinha US, Yaghmai A, Thompson L, Dai BY, Taira RK, Dionisio JDN, Kangarloo H. “Evaluation of SNOMED 3.5 in Representing Concepts in Chest Radiology Reports: Integration of a SNOMED Mapper with a Radiology Reporting Workstation.” In Proceedings of the AMIA 2000 Annual Fall Symposium, November 4–8, 2000.

Dionisio JDN, Taira RK, Sinha US, Johnson DB, Dai BY, Tashima GH, Blythe S, Johnson R, Kangarloo H. “Teleradiology as a Foundation for an Enterprise-Wide Health Care Delivery System.” Radiographics 20(4):1137-1150, July-August 2000. http://radiographics.rsnajnls.org/cgi/content/abstract/20/4/1137

Thompson L, Sinha U, Madhu E, Ratib O, Dionisio JDN, Dai B, Taira R, Kangarloo H. “Structured Data Entry for Cardiology and Cardiac Imaging: User Profile Based Templates.” In Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, pp. 521–526, June 26–29, 2000.

Dionisio JDN, Johnson DB, Bui AAT, Son R, Churchill B, Kangarloo H. “Individually Tailored, Multimedia Physician-Patient Communication.” In Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, pp. 513–520, June 26–29, 2000.

Valdez JA, Dionisio JDN, Golamco M, Son R, Kangarloo H. “Creation of a Health Services Research Client in a Distributed Telemedicine Environment.” In Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, pp. 505–512, June 26–29, 2000.

Dai BY, Thompson L, Dionisio JDN, Kangarloo H, Taira RK, Sinha US. “The Next Step.” Imaging Economics, Spring 2000. http://www.imagingeconomics.com/2000/04/the-next-step/

Kangarloo H, Valdez JA, Yao L, Chen S, Curran J, Goldman D, Sinha US, Dionisio JDN, Taira RK, Sayre J, Seeger L, Johnson R, Barbaric Z, Steckel R. “Improving the Quality of Care Through Routine Teleradiology Consultation.” Academic Radiology 7(3):149–155, March 2000.

Kangarloo H, Dionisio JDN, Sinha US, Johnson DB, Taira RK. “Process Models for Telehealth: An Industrial Approach to Quality Management of Distant Medical Practice.” In Proceedings of the AMIA ’99 Annual Fall Symposium, November 6–10, 1999.

Johnson DB, Chu WW, Dionisio JDN, Taira RK, Kangarloo HK. “Creating and Indexing Teaching Files from Free-Text Patient Reports.” In Proceedings of the AMIA ’99 Annual Fall Symposium, November 6–10, 1999. Nominated for the Best Paper Award.

Dionisio JDN, Sinha US, Dai B, Johnson DB, Taira RK. “Initial Experiences with Building a Health Care Infrastructure Based on Java and Object-Oriented Database Technology.” In Proceedings of the AMIA ’99 Annual Fall Symposium, November 6–10, 1999. Nominated for the Best Paper Award.

Caruana R, Kangarloo H, Dionisio JDN, Sinha US, Johnson DB. “Case-Based Explanation of Non-Case-Based Learning Methods.” In Proceedings of the AMIA ’99 Annual Fall Symposium, November 6–10, 1999.

Dionisio JDN, Cárdenas AF. “A Unified Data Model for Representing Multimedia, Timeline, and Simulation Data.” IEEE Transactions on Knowledge and Data Engineering 10(5):746-767, September/October 1998. http://doi.ieeecomputersociety.org/10.1109/69.729730

• This paper also appears in Readings in Multimedia Computing and Networking, pp. 391-412, ed. K. Jaffay and H. Zhang, Academic Press (Morgan Kaufmann Publishers), 2002.

Dionisio JDN, Cárdenas AF, Lufkin RB, DeSalles A, Black KL, Taira RK, Chu WW. “A Multimedia Database System for Thermal Ablation Therapy of Brain Tumors.” Journal of Digital Imaging 10(1):21-26, February 1997.

Dionisio JDN, Cárdenas AF. “MQuery: A Visual Query Language for Multimedia, Timeline, and Simulation Data.” Journal of Visual Languages and Computing 7:377-401, 1996.

Dionisio JDN, Cárdenas AF, Taira RK, Aberle DR, Chu WW, McNitt-Gray MF, Goldin J, Lufkin RB. “A Unified Timeline Model and User Interface for Multimedia Medical Databases.” Computerized Medical Imaging and Graphics 20(4):333-346, July-August 1996.

Aberle DR, Dionisio JDN, McNitt-Gray MF, Taira RK, Cárdenas AF, Goldin JG, Brown K, Figlin RA, Chu WW. “Integrated Multimedia Timeline of Medical Images and Data for Thoracic Oncology Patients.” Radiographics 16(3):669-681, May 1996. http://radiographics.rsnajnls.org/cgi/content/abstract/16/3/669

Invited/Opinion Pieces

Dionisio JDN. “Immersion trip.” (online title: “The metaverse could actually help people”) MIT Technology Review 124(6):22-23, November/December 2021. https://www.technologyreview.com/2021/10/27/1036817/metaverse-facebook-virtual-reality-augmented/

Peer-Reviewed or Invited Conference Presentations

Chow M, Çetinkaya-Rundel M, Dionisio JDN. “Real-world tools, engaged students.” Invited presentation hosted by GitHub. 49th ACM Technical Symposium on Computer Science Education (SIGCSE ’18). Baltimore, Maryland. February 22, 2018. https://youtu.be/gzU8M6Yn9-s?t=36m00s

Choe EJ, Bachoura EB, Shin YS, Dionisio JDN, Dahlquist KD. “GRNsight v2: A Web Application for Visualizing Models of Gene Regulatory Networks.” Southern California Conferences for Undergraduate Research (SCCUR) 2017, Pomona, California. November 18, 2017.

Petredis M, Dahlquist KD, Dionisio JDN. “Gene Database Construction and GenMAPP Analysis of Sinorhizobium meliloti Microarray Data Comparing Salt and Sucrose Stress.” 2014 Southern California Conference on Undergraduate Research (SCCUR), California State University Fullerton, November 22, 2014.

Dionisio JDN. “Wearable Computing and the Reversal of Virtual Reality.” Immersion 2014. Immersive Education Initiative, Los Angeles, California, June 6–8, 2014.

Nichols T, Dionisio JDN. “Empirical Analysis of Popular Cryptographic Algorithms.” 2012 Southern California Conference on Undergraduate Research (SCCUR), California State University Channel Islands, November 17, 2012.

Brous RA, Dionisio JDN, Dahlquist KD. “Implementing Multiple Species Export in XMLPipeDB’s GenMAPP Builder.” 2011 Southern California Conference on Undergraduate Research (SCCUR), Mt. San Antonio College, November 19, 2011.

Parks KC, Dahlquist KD, Dionisio JDN. “Using XMLPipeDB to Create a GenMAPP-Compatible Gene Database for the Analysis of DNA Microarray Data for Staphylococcus aureus MRSA 252.” 2010 Southern California Conference on Undergraduate Research (SCCUR), Pepperdine University, November 20, 2010.

Dahlquist KD, Dionisio JDN. “An Open Source, Open Science Pedagogy for Computational Biology.” Beyond BIO2010 Symposium, National Academy of Sciences, Washington, D.C. May 21-22, 2010.

Dahlquist KD, Alphonso A, Smith D, Villaflores C, Dionisio JDN. “XMLPipeDB: A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources.” 10th annual Bioinformatics Open Source Conference (BOSC 2009). Stockholm, Sweden, June 27-28, 2009. http://www.slideshare.net/bosc/dahlquistxmlpipedbbosc2009

Buriticá A, Dionisio JDN. “OpenJSGL: Web 3D Rendering Without Plug-Ins.” 2007 Southern California Conference on Undergraduate Research (SCCUR), California State University Los Angeles, November 17, 2007. http://myweb.lmu.edu/dondi/share/pub/sccur2007/openjsgl-sccur-2007.pdf

Dahlquist KD, Dionisio JDN. “An Open Source Framework for Teaching Bioinformatics.” 8th annual Bioinformatics Open Source Conference (BOSC 2007). Vienna, Austria, July 19–20, 2007. http://www.slideshare.net/bosc/an-open-source-framework-for-teaching-bioinformatics

Dahlquist KD, Nicholas J, Dionisio JDN. “XMLPipeDB: A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources.” 8th annual Bioinformatics Open Source Conference (BOSC 2007). Vienna, Austria, July 19–20, 2007. http://www.slideshare.net/bosc/xmlpipedb

Dahlquist KD, Dionisio JDN. “A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources.” 7th annual Bioinformatics Open Source Conference (BOSC 2006). Fortaleza, Brazil, August 5, 2006.

Dionisio JDN. “A Gesture-Driven User Interface for Medical Image Viewing.” The Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 2003, Chicago, Illinois, December 2003.

Dionisio JDN. “A Design for Integrating Parallel and Overlapping Software Development Projects.” International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences 2002, Las Vegas, Nevada, June 2002.

Dionisio JDN. “A Java-Based Framework for Maintaining Patient Education Content.” International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences 2001, Las Vegas, Nevada, June 2001.

Dionisio JDN. “Individually-Tailored, Multimedia Physician-Patient Communication”

• International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences 2000, Las Vegas, Nevada, June 2000.

• The Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 1999, Chicago, Illinois, November 1999.

Dionisio JDN. “A Systematic Method for New Technology Integration into a Distributed Electronic Infrastructure to Improve Quality of Care.” The Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 1999, Chicago, Illinois, November 1999.

Dionisio JDN. “Individually Tailored Time Management: A Process Model-Based Scheduler Infrastructure Integrated with a Patient Medical Record.” The American Roentgen Ray Society Annual Meeting 1999, New Orleans, Louisiana, May 1999.

Dionisio JDN. “An Integrated and Customized System for a Teleradiology Environment.” The Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 1998, Chicago, Illinois, November 1998.

Dionisio JDN. “Teleradiology and Telemedicine at UCLA.” Invited Presentation, UCLA Computer Science Department, University of California, Los Angeles, April 1998.

Dionisio JDN. “Individually Tailored Medicine: Innovative, High Quality Managed Care for the Next Millenium.” Human Resources Council I, Manufacturers Alliance, The Ritz-Carlton/Buckhead, Atlanta, Georgia, November 1997.

Dionisio JDN. “The Internet for Smart But Busy People.” Invited Presentation, Harris Corporation, Melbourne, Florida, October 1997.

Dionisio JDN. “The Role of Teleradiology in Outcomes Assessment: A Reliable Quality Indicator.” Teleradiology & PACS, The Adolphus, Dallas, Texas, September 1997.

Dionisio JDN. “How Telemedicine and Hospital Information Systems Differ.” Tribal Healthcare Building Blocks: Telecommunications and Information Technology, Town and Country Hotel, San Diego, California, August 1997.

Dionisio JDN. “The UCLA/CLC Teleradiology System.” Clínica Las Condes Imaging Center Inauguration, Santiago, Chile, July 1997.

Dionisio JDN. “MSchema & MQuery: Visual Interfaces to Visual Data.” UCLA Computer Science Department Annual Research Review, University of California, Los Angeles, April 1997.

Dionisio JDN. “Telemedicine in an Era of Managed Care: Improving Quality and Lowering Costs Based on an Electronic Infrastructure.” The Annual Telemedicine West Conference & Exhibition, Loews Coronado Bay Resort, San Diego, California, December 1996.

Dionisio JDN. “QuickDraw 3D: 3D Graphics for Everyone.” Invited Presentation, Department of Electrical Engineering & Computer Science, Loyola Marymount University, Los Angeles, March 1996.

Internal Conference Presentations

Samdarshi M, Dahlquist KD, Dionisio JDN. “New Layouts, Data Types, and Architecture for GRNsight 3: A Web application for Visualizing Gene Regulatory Networks.” Eleventh Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California. March 23, 2019.

Choe E, Dionisio JDN, Dahlquist KD. “Extending the Visualization Capabilities of GRNsight: a Web Application for Visualizing Models of Gene Regulatory Networks.” Tenth Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California. March 24, 2018.

Shin J, Dahlquist KD, Dionisio JDN. “New Graph Layouts for GRNsight: a Web Application for Visualizing Models of Gene Regulatory Networks.” Tenth Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California. March 24, 2018.

Anguiano N, Varshneya A, Dahlquist KD, Dionisio JDN. “Design and Layout Improvement to GRNsight v2.0: A Web App and Service for Visualizing Small- to Medium-Scale Gene Regulatory Networks.” 9th Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California. March 25, 2017.

Southwick B, Anguiano N, Dahlquist KD, Dionisio JDN. “GRNsight: A Web Application for Visualizing Models of Gene Regulatory Networks.” Sixth Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California, March 29, 2014.

Pita A, Dionisio JDN, Dahlquist KD. “Constructing a GenMAPP-compatible Gene Database for Streptococcus pneumoniae to Perform Pathway Analysis on Microarray Data Comparing Biofilm Versus Planktonic Forms.” Sixth Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California, March 29, 2014.

Dahilig J, Forney A, Nichols T, Dionisio JDN. “Quo: A Programmable Social Network Status Demultiplexer.” Fourth Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California, March 23, 2012.

Parks KC, Dionisio JDN, Dahlquist KD. “Using XMLPipeDB to Create a GenMAPP-compatible Gene Database for the Analysis of DNA Microarray Data for Staphylococcus aureus MRSA 252.” Third Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California, March 19, 2011.

Scientific Exhibits and Posters

Samdarshi M, Choe E, Bachoura EB, Shin J, Dionisio JDN, Dahlquist KD. “Data Comparison Features and Development Tool Improvements for GRNsight: a Web App for Visualizing Gene Regulatory Networks.” Tenth Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California. March 24, 2018.

Taus R, Dmitrieva S, Dionisio JDN. “Draw 2 Cards: A Look into Trading Card Games.” Tenth Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California. March 24, 2018.

Choe EJ, Samdarshi M, Shin YS, Bachoura EB, Dahlquist KD, Dionisio JDN. “Improved Data Interoperability for GRNsight: A Web Application for Visualizing Models of Gene Regulatory Networks.” 9th Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California. March 25, 2017.

Fitzpatrick Z, Taus R, Dionisio JDN. “Fallible AI.” 9th Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California. March 25, 2017.

Lorton F, Dionisio JDN, Marino B. “Creating a Better Digital Logic Simulation for Teachers and Students.” 9th Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California. March 25, 2017.

Anguiano N, Varshneya A, Dionisio JDN, Dahlquist KD, Fitzpatrick BG. “Improvements to GRNsight: A Web Application for Visualizing Models of Gene Regulatory Networks.”

• 40th West Coast Biological Sciences Undergraduate Research Conference (WCBSURC). April 25, 2015.
• 2014 Southern California Conference on Undergraduate Research (SCCUR), California State University Fullerton, November 22, 2014.

Akers A, Loustau J, Dionisio JDN. “A Comparative Analysis of the Learnability of Google Glass, Android Wear, and Pebble Smartwatch.” 2014 Southern California Conference on Undergraduate Research (SCCUR), California State University Fullerton, November 22, 2014.

Patno S, Dahlquist KD, Dionisio JDN. “Constructing a Combined Gene Database for Staphylococcus aureus strains MRSA252 and COL for the Analysis of Microarray Data.” 2014 Southern California Conference on Undergraduate Research (SCCUR), California State University Fullerton, November 22, 2014.

Murphy DB, Dahlquist KD, Dionisio JDN. “Implementing Support for Multiple Species in XMLPipeDB’s GenMAPP Builder.” 2010 Southern California Conference on Undergraduate Research (SCCUR), Pepperdine University, November 20, 2010. http://myweb.lmu.edu/dondi/share/pub/sccur2010/xmlpipedb-sccur-2010.pdf

Paiz-Ramirez K, Dahlquist KD, Dionisio JDN. “Using XMLPipeDB to Create a GenMAPP-compatible Gene Database for the Analysis of DNA Microarray Data for Mycobacterium tuberculosis.” Society for the Advancement of Chicanos and Native Americans in Science National Conference, Anaheim, California, October 2010.

Parks KC, Hirning AJ, McDonald K, Dionisio JDN, Dahlquist KD. “Extending XMLPipeDB to Create GenMAPP-compatible Gene Databases for the Analysis of DNA Microarray Data from Human Pathogens.” Experimental Biology 2010, Anaheim, California. April 24-28, 2010.

Pak B, Murphy D, Dionisio JDN, Dahlquist KD. “Extending XMLPipeDB with GO Slim to Update the GenMAPP-compatible Gene Database for Budding Yeast, Saccharomyces cerevisiae, for the Analysis of DNA Microarray Data.” Experimental Biology 2010, Anaheim, California. April 24-28, 2010.

Dahlquist KD, Dionisio JDN. “Fostering Interdisciplinary Teamwork in an Undergraduate Biological Databases Course.” 49th Annual American Society for Cell Biology Meeting. San Diego, California, December 5-9, 2009.

Dionisio JDN, Dahlquist KD. “Improving the computer science in bioinformatics through an open source pedagogy.” First RECOMB Satellite Conference on Bioinformatics Education, March 2009.

Alphonso A, Villaflores C, Smith D, Dahlquist KD, Dionisio JDN. “Extending XMLPipeDB to create gene databases for plants and microorganisms for the analysis of DNA microarray data.” First RECOMB Satellite Conference on Bioinformatics Education, March 2009.

Dahlquist KD, Dionisio JDN. “Fostering interdisciplinary teamwork in an undergraduate biological databases course.” First RECOMB Satellite Conference on Bioinformatics Education, March 2009.

Schmidt KO, Dionisio JDN. “Texture-Map-Based Sound Synthesis in Rigid-Body Simulations.” In _SIGGRAPH ’08: ACM SIGGRAPH 2008 posters_, August 2008. Student Research Competition semi-finalist. http://dl.acm.org/citation.cfm?id=1400885.1400897

Dionisio JDN, Toal R. “Teaching by Collaborating: Toward a Pedagogy Adapted from the Open Source Culture.” National Science Foundation CCLI Showcase, SIGCSE 2008, Portland, Oregon, March 12-15, 2008.

Dahlquist KD, Barrett J, Boyle J, Carasso A, Hoffman D, Naffas B, Nicholas J, Ruiz R, Spicer S, Dionisio JDN. “A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources.” 14th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2006). Fortaleza, Brazil, August 6–10, 2006. http://www.iscb.org/cms_addon/conferences/ismb2006/archive/ismb2006.cbi.cnptia.embrapa.br/posters_list.php#B-36

Smith M, Dionisio JDN. “Batchboard: Unix Interaction for Everyone.” 2005 Southern California Conference on Undergraduate Research (SCCUR), University of California Riverside, November 19, 2005. http://myweb.lmu.edu/dondi/share/pub/sccur2005/batchboard-sccur-2005.pdf

Morioka C, Bui AAT, Dionisio JDN, Johnson DB, Sinha U, Weinger G, et. al. “openPACS: An Open Source PACS for Evidence-Based Medical Practice, Research, and Education.” infoRAD 2005 Exhibit, Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 2005. http://rsna2005.rsna.org/rsna2005/v2005/conference/event_display.cfm?id=66601&p_navID=272&em_id=4415393

Dionisio JDN, Ying R, Morioka C, Bui AAT, Kangarloo H. “An Open Source Image Communicator.” infoRAD 2004 Exhibit, Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 2004. http://rsna2004.rsna.org/rsna2004/v2004/conference/event_display.cfm?id=66601&p_navID=272&em_id=4411335

Dionisio JDN, Bui AAT, Ying R, Morioka C, Kangarloo H. “A Gesture-Driven User Interface for Medical Image Viewing.” infoRAD 2003 Exhibit (Magna cum Laude), Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 2003. http://rsna2003.rsna.org/Rsna2003/Vbk/Conference/event_display.cfm?id=66601&p_navID=272&em_id=3102569

Sinha U, Thompson L, El-Saden S, Ardekani S, Dionisio JDN, Kangarloo H. “Automated MR Brain Image Study Summarization.” infoRAD 2003 Exhibit, Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 2003.

Bui AAT, Taira R, Dionisio JDN, Sinha U, Morioka C, Kangarloo H. “Problem-Centric Visualization of an Imaging-Based Electronic Medical Record.” infoRAD 2003 Exhibit, Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 2003.

Morioka C, Dionisio JDN, Ying R, El-Saden S, Duckwiler G, Kangarloo H. “A Wet Read System to Capture the Clinical Hypothesis of Patient’s Condition and Radiologist’s Response as a DICOM Presentation State.” infoRAD 2003 Exhibit, Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 2003.

Sinha US, Thompson L, Ratib OM, Madu E, Taira RK, Dionisio JDN, Kangarloo H. “Focused Knowledge Navigation Implementing Structured Data Entry for Cardiology and Cardiac Imaging.” infoRAD ’99 Exhibit, Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 1999.

Sinha US, Son R, Taira RK, Johnson DB, Dionisio JDN, Kangarloo H. “Image Content Modeling for Evidence-Based Medical Practice.” infoRAD ’99 Exhibit, Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 1999.

Sinha US, Dai BY, Taira RK, Johnson DB, Dionisio JDN, Kangarloo H. “Dictated Radiology Report to Standardized Representation.” infoRAD ’99 Exhibit, Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 1999.

Johnson DB, Dionisio JDN, Sinha US, Ratib OM, Kangarloo H. “Using Digital Ink for Structured Medical Reporting.” infoRAD ’99 Exhibit, Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 1999.

Johnson DB, Dionisio JDN, Taira RK, Caruana R, Chu WW, Kangarloo H. “Tailoring Medical Literature Searches to Support Evidence-Based Medical Practice.” infoRAD ’99 Exhibit, Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 1999.

Dionisio JDN, Johnson DB, Bui AAT, Taira RK, Aberle DR, Kangarloo H. “A Systematic Method for New Technology Integration into a Distributed Electronic Infrastructure to Improve Quality of Care.” infoRAD ’99 Exhibit, Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 1999.

Dionisio JDN, Johnson DB, Bui AAT, Son R, Churchill B, Kangarloo H. “Individually Tailored, Multimedia Physician-Patient Communication.” infoRAD ’99 Exhibit, Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 1999.

Dai BY, Sinha US, Dionisio JDN, Tashima GH, Johnson R, Kangarloo H. “Individually Tailored Time Management ’ A Patient-Centric Scheduler.” infoRAD ’99 Exhibit, Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 1999.

Caruana R, Dionisio JDN, Johnson DB, Taira RK, Kangarloo H. “Providing Case-Based Explanations for Non-Case-Based Methods Such as Artificial Neural Nets or Decision Trees.” infoRAD ’99 Exhibit, Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 1999.

Caruana R, Dionisio JDN, Johnson DB, Taira RK, Kangarloo H. “Automatic Imaging Protocol Selection.” infoRAD ’99 Exhibit, Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 1999.

Bui AAT, Aberle DR, Dionisio JDN, Son R, McNitt-Gray MF, Cárdenas AF. “Timeline: A Platform-Independent, Configurable Interface for Problem-Centric Multimedia Patient Records.” infoRAD ’99 Exhibit, Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 1999.

Dai BY, Sinha US, Dionisio JDN, et. al. “Individually Tailored Time Management: Patient-Centric Scheduling.” Poster, American Medical Informatics Association (AMIA) Annual Fall Symposium, 1999.

Sinha US, Taira RK, Dai BY, Tashima GH, Dionisio JDN, Kangarloo H. “Decision Table Formalism for Guideline Representation of Cholesterol Management: Application to Patient/Physicians Collaborative Path for Risk Reduction of Heart Disease.” Poster, American Medical Informatics Association (AMIA) Annual Fall Symposium, 1999.

Dionisio JDN, Taira RK, Johnson DB, Sinha US, Tashima GH, Kangarloo H. “An Integrated and Customized System for a Teleradiology Environment.” infoRAD ’98 Exhibit (Certificate of Merit), Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 1998.

Dionisio JDN, Sinha US, Taira RK, et. al. “Distributed Teleradiology System in Routine Clinical Practice and Engineering Approach to Quality Assurance.” Poster, American Roentgen Ray Society Meeting, San Francisco, 1998.

Kangarloo H, Curran J, Dionisio JDN, et. al. “Comparison of Quality of Interpretation of General Radiologists Versus Subspecialists: Potential Implications for Teleradiology Licensure.” Poster, American Roentgen Ray Society Annual Meeting, San Francisco, 1998.

Dionisio JDN, Sinha US, Tashima GH, Dai BY, Langdon P, Golamco M, Taira RK, Steckel R, Kangarloo H. “Teleradiology Information System Architecture.” Poster, Scientific Assembly and Annual Meeting of the Radiological Society of North America (RSNA) 1997.

Internal Scientific Exhibits and Posters

Anguiano N, Varshneya A, Dionisio JDN, Dahlquist KD, Fitzpatrick BG. “Improvements to GRNsight: A Web Application for Visualizing Models of Gene Regulatory Networks.” Seventh Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California, March 20, 2015.

Petredis M, Dionisio JDN, Dahlquist KD. “Gene Database Construction and GenMAPP Analysis of Sinorhizobium meliloti Microarray Data Comparing Salt and Sucrose Stress.” Sixth Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California, March 29, 2014.

McGee K, Dionisio JDN, Dahlquist KD. “Pathway Analysis of Leishmania major Promastigote and Amastigote Stages with GenMAPP and MAPPFinder.” Sixth Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California, March 29, 2014.

Murphy DB, Dahlquist KD, Dionisio JDN. “Implementing Support for Multiple Species in XMLPipeDB’s GenMAPP Builder.” Third Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California, March 19, 2011.

McDonald K, Dionisio JDN, Dahlquist KD. “Using XMLPipeDB to Create a GenMAPP-compatible Gene Database for Pseudomonas aeruginosa for the Analysis of DNA Microarray Data.” Second Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California, March 20, 2010.

Pak B, Murphy DB, Dahlquist KD, Dionisio JDN. “Extending XMLPipeDB with GO Slim to Update the GenMAPP-compatible Gene Database for Budding Yeast, Saccharomyces cerevisiae, for the Analysis of DNA Microarray Data.” Second Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California, March 20, 2010.

Parks KC, Dionisio JDN, Dahlquist KD. “Using XMLPipeDB to Create a GenMAPP-compatible Gene Database for the Analysis of DNA Microarray Data for Staphylococcus aureus MRSA252.” Second Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California, March 20, 2010.

Alphonso A, Villaflores C, Smith D, Dionisio JDN, Dahlquist KD. “Extending XMLPipeDB to Create GenMAPP-compatible Gene Databases for Plants and Microorganisms for the Analysis of DNA Microarray Data.” First Annual Undergraduate Research Symposium, Loyola Marymount University, Los Angeles, California, March 22, 2009.

Dionisio JDN, Toal R, Dickson CL, August S, Dorin P. “A Computer Science Teaching Framework Drawn from the Open Source Culture.” Poster session, Scholarship of Teaching and Learning (SoTL) Showcase Week, Loyola Marymount University, September 25, 2007.

Seminar/Non-Conference Presentations and Talks

Dionisio JDN, Drummond E, Washburn R. “Helping Students Learn Discipline-Specific Ways of Thinking and Practicing: Examples from Across the Disciplines.” Loyola Marymount University Center for Teaching Excellence (CTE), March 19, 2014.

Siniawski M, Dionisio JDN. “Standards-based Grading.” Loyola Marymount University Center for Teaching Excellence (CTE), January 22, 2013.

Dionisio JDN. “The Internet Technology Status Quo: What’s Hot, What’s Cool, and What Might Actually be Useful.” Rotary Club of Westchester, September 30, 2009.

Gilbert R, Dionisio JDN. “Get a Life…Better Yet, Get a Second Life: An Introduction to Virtual Worlds.” Loyola Marymount University Faculty Colloquium, March 20, 2009.

Dionisio JDN, Gilbert R. “LMU in Second Life.” Loyola Marymount University Center for Teaching Excellence (CTE), March 19, 2009.

Dahlquist KD, Dionisio JDN. “Using Google Sites and MediaWiki.” Loyola Marymount University Center for Teaching Excellence (CTE), October 22, 2008.

Dionisio JDN. “A Wiki Tutorial.” Regular meeting of the Los Angeles Chapter of the Association for Computing Machinery, October 6, 2008.

Dionisio JDN, Toal R. “A Computer Science Pedagogy Adapted from the Open Source Culture.” Loyola Marymount University Center for Teaching Excellence (CTE), April 24, 2008.

Dionisio JDN. “An Open Source Culture in the Undergraduate Computer Science Curriculum.”

• Loyola Marymount University’s President’s Day 2006, March 18, 2006.

• Regular meeting of the Los Angeles Chapter of the Association for Computing Machinery, October 12, 2005.

Dissertation

Dionisio JDN. “An Integrated Data Model, Language, and User Interface for Knowledge, Multimedia, and Simulations.” December 1996.